Outlier Check and Removal

Project information

Forked repo used to filter the results generated with checker_complete.2.pl, which finds outlier sequences in multiple sequence alignments on the amino acid level.

To be modified: several of the scripts are tailored to sequence headers labeled with AD followed by numbers ranging from 0 to 9, repeating it 2 times and a maximum of 3 times. Likewise, it searches for orthologous groups from OrthoDB v10.1, which always include "at6447" in their identifier. Additionally, to remove the outliers some scripts parse the FASTA files with the suffix .aa.mafft.fas.

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December 31, 2022

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