Outlier Check and Removal

Forked repo used to filter the results generated with checker_complete.2.pl, which finds outlier sequences in multiple sequence alignments on the amino acid level.

To be modified: several of the scripts are tailored to sequence headers labeled with AD followed by numbers ranging from 0 to 9, repeating it 2 times and a maximum of 3 times. Likewise, it searches for orthologous groups from OrthoDB v10.1, which always include "at6447" in their identifier. Additionally, to remove the outliers some scripts parse the FASTA files with the suffix .aa.mafft.fas.

Forked from Júlia Calvet / Outlier check removal